STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Celf_0712KEGG: response regulator with CheY-like receiver, AAA-type ATPase, and DNA-binding domains; PFAM: response regulator receiver; SMART: response regulator receiver. (120 aa)    
Predicted Functional Partners:
Celf_0704
CheA signal transduction histidine kinase; KEGG: chemotaxis protein histidine kinase-like protein; PFAM: ATP-binding region ATPase domain protein; Signal transducing histidine kinase homodimeric; Hpt domain protein; CheW domain protein; SMART: CheW domain protein; ATP-binding region ATPase domain protein; Hpt domain protein.
 
 0.996
Celf_0711
KEGG: jde:Jden_1999 hypothetical protein.
   
 0.989
Celf_0713
KEGG: hypothetical protein.
     0.977
Celf_0705
KEGG: jde:Jden_2003 CheW protein; PFAM: CheW domain protein; SMART: CheW domain protein.
 
 0.970
Celf_0710
KEGG: gob:Gobs_5001 response regulator receiver protein; PFAM: response regulator receiver; SMART: response regulator receiver.
 
0.970
Celf_0706
KEGG: methyl-accepting chemotaxis protein; PFAM: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; SMART: chemotaxis sensory transducer; histidine kinase HAMP region domain protein.
 
 0.955
Celf_1047
KEGG: mpo:Mpop_1216 methyl-accepting chemotaxis sensory transducer; PFAM: CHASE3 domain protein; histidine kinase HAMP region domain protein; chemotaxis sensory transducer; SMART: chemotaxis sensory transducer; histidine kinase HAMP region domain protein.
 
 0.934
Celf_1183
KEGG: methyl-accepting chemotaxis protein; PFAM: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; SMART: chemotaxis sensory transducer; histidine kinase HAMP region domain protein.
 
 0.925
Celf_0234
KEGG: methyl-accepting chemotaxis protein; PFAM: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; SMART: chemotaxis sensory transducer; histidine kinase HAMP region domain protein.
 
 0.924
Celf_0688
KEGG: flagellar motor switch protein FliN; TIGRFAM: flagellar motor switch protein FliN; PFAM: surface presentation of antigens (SPOA) protein.
  
 
 0.924
Your Current Organism:
Cellulomonas fimi
NCBI taxonomy Id: 590998
Other names: C. fimi ATCC 484, Cellulomonas fimi ATCC 484, Cellulomonas fimi DSM 20113, Cellulomonas fimi str. ATCC 484, Cellulomonas fimi strain ATCC 484
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