STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Celf_0829TIGRFAM: diguanylate cyclase; peptidase S26B, signal peptidase; PFAM: EAL domain protein; GGDEF domain containing protein; Peptidase S24/S26A/S26B, conserved region; KEGG: diguanylate cyclase/phosphodiesterase; SMART: EAL domain protein; GGDEF domain containing protein. (1213 aa)    
Predicted Functional Partners:
Celf_3584
Protein serine phosphatase with GAF(s) sensor(s); KEGG: cmi:CMM_2257 putative protein kinase/phosphatase regulator hybrid protein; PFAM: Stage II sporulation protein E; GAF domain protein; SMART: protein phosphatase 2C domain protein; GAF domain protein.
 
  
 0.905
Celf_1558
Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s); TIGRFAM: diguanylate cyclase; PAS sensor protein; PFAM: EAL domain protein; GGDEF domain containing protein; PAS fold domain protein; KEGG: diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s); SMART: EAL domain protein; GGDEF domain containing protein; PAC repeat-containing protein; PAS domain containing protein.
 
 
0.818
Celf_0828
KEGG: hmg:100203919 hypothetical protein LOC100203919.
       0.773
Celf_1927
Diguanylate cyclase with PAS/PAC sensor; TIGRFAM: PAS sensor protein; PFAM: PAS fold-3 domain protein; periplasmic binding protein/LacI transcriptional regulator; GGDEF domain containing protein; KEGG: diguanylate cyclase with PAS/PAC sensor; SMART: GGDEF domain containing protein; PAC repeat-containing protein; PAS domain containing protein.
 
 0.765
Celf_2724
TIGRFAM: diguanylate cyclase; PFAM: EAL domain protein; GGDEF domain containing protein; KEGG: diguanylate cyclase/phosphodiesterase; SMART: EAL domain protein; GGDEF domain containing protein.
 
 
0.661
Celf_2398
TIGRFAM: PAS sensor protein; PFAM: Stage II sporulation protein E; PAS fold-3 domain protein; PAS fold-4 domain protein; GAF domain protein; KEGG: kra:Krad_0947 putative PAS/PAC sensor protein; SMART: protein phosphatase 2C domain protein; GAF domain protein; PAC repeat-containing protein; PAS domain containing protein.
 
 0.555
Celf_2294
Diguanylate cyclase with PAS/PAC sensor; TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; PAS fold-4 domain protein; KEGG: kra:Krad_4428 diguanylate cyclase with PAS/PAC sensor; SMART: GGDEF domain containing protein.
 
 
0.507
Celf_2367
KEGG: diguanylate phosphodiesterase; PFAM: EAL domain protein; SMART: EAL domain protein.
  
   
 0.504
Celf_0830
TIGRFAM: methionine-R-sulfoxide reductase; KEGG: xce:Xcel_0293 methionine-R-sulfoxide reductase; PFAM: Methionine sulfoxide reductase B; Belongs to the MsrB Met sulfoxide reductase family.
       0.492
Celf_0268
Diguanylate cyclase with GAF sensor; TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: diguanylate cyclase with GAF sensor; SMART: GGDEF domain containing protein; GAF domain protein.
 
 
0.477
Your Current Organism:
Cellulomonas fimi
NCBI taxonomy Id: 590998
Other names: C. fimi ATCC 484, Cellulomonas fimi ATCC 484, Cellulomonas fimi DSM 20113, Cellulomonas fimi str. ATCC 484, Cellulomonas fimi strain ATCC 484
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