STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Celf_0858PFAM: Uncharacterised conserved protein UCP014753; KEGG: cai:Caci_3809 hypothetical protein. (683 aa)    
Predicted Functional Partners:
Celf_0857
PFAM: D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; D-isomer specific 2-hydroxyacid dehydrogenase catalytic region; KEGG: cai:Caci_3810 D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding.
 
     0.940
Celf_0856
KEGG: ami:Amir_2923 regulatory protein DeoR; PFAM: regulatory protein DeoR; periplasmic binding protein/LacI transcriptional regulator; SMART: regulatory protein DeoR.
 
     0.792
Celf_2403
KEGG: kfl:Kfla_2131 ricin B lectin; PFAM: Ricin B lectin; glycoside hydrolase family 5; SMART: Ricin B lectin; Belongs to the glycosyl hydrolase 5 (cellulase A) family.
 
     0.591
Celf_3320
PFAM: Oxidoreductase domain; oxidoreductase domain protein; KEGG: xce:Xcel_2657 oxidoreductase domain protein.
  
     0.591
Celf_0859
KEGG: hypothetical protein.
       0.530
Celf_3319
KEGG: hypothetical protein.
  
     0.504
Celf_2770
PFAM: glycoside hydrolase family 2 immunoglobulin domain protein beta-sandwich; glycoside hydrolase family 2 sugar binding; glycoside hydrolase family 2 TIM barrel; KEGG: bcv:Bcav_0037 beta-mannosidase.
 
     0.459
Celf_0376
Cellulase; KEGG: xce:Xcel_0182 cellulase; PFAM: glycoside hydrolase family 5; protein of unknown function DUF291; Belongs to the glycosyl hydrolase 5 (cellulase A) family.
 
     0.436
Celf_3296
PFAM: Xylose isomerase domain-containing protein TIM barrel; KEGG: xce:Xcel_0895 xylose isomerase domain protein TIM barrel.
 
     0.418
Celf_3155
Alpha-N-arabinofuranosidase; PFAM: Ricin B lectin; KEGG: scb:SCAB_79241 putative arabinofuranosidase; SMART: Ricin B lectin.
  
     0.409
Your Current Organism:
Cellulomonas fimi
NCBI taxonomy Id: 590998
Other names: C. fimi ATCC 484, Cellulomonas fimi ATCC 484, Cellulomonas fimi DSM 20113, Cellulomonas fimi str. ATCC 484, Cellulomonas fimi strain ATCC 484
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.