STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Celf_0863KEGG: fre:Franean1_6964 RND family efflux transporter MFP subunit; TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein. (409 aa)    
Predicted Functional Partners:
Celf_0865
PFAM: protein of unknown function DUF214; KEGG: fre:Franean1_6962 hypothetical protein.
 
 
 0.972
Celf_0864
KEGG: fre:Franean1_6963 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase.
 
 
 0.964
Celf_1142
PFAM: protein of unknown function DUF214; KEGG: protein of unknown function DUF214.
 
 
 0.833
Celf_1146
PFAM: protein of unknown function DUF214; KEGG: protein of unknown function DUF214.
 
 
 0.829
Celf_1143
KEGG: ABC transporter related protein; PFAM: ABC transporter related; SMART: AAA ATPase.
 
 
 0.779
Celf_0867
KEGG: fra:Francci3_0196 secretion protein HlyD.
 
    
0.714
Celf_1147
KEGG: ABC transporter related protein; PFAM: ABC transporter related; SMART: AAA ATPase.
 
 
 0.618
Celf_0866
KEGG: fre:Franean1_6961 hypothetical protein.
       0.601
Celf_2930
ABC transporter related protein; KEGG: hch:HCH_06448 lysophospholipase L1 biosynthesis ABC transporter ATPase; PFAM: ABC transporter related; SMART: AAA ATPase.
 
 
 0.493
Celf_0532
PFAM: protein of unknown function DUF214; KEGG: protein of unknown function DUF214.
  
 
 0.484
Your Current Organism:
Cellulomonas fimi
NCBI taxonomy Id: 590998
Other names: C. fimi ATCC 484, Cellulomonas fimi ATCC 484, Cellulomonas fimi DSM 20113, Cellulomonas fimi str. ATCC 484, Cellulomonas fimi strain ATCC 484
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.