STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Celf_0882PFAM: extracellular solute-binding protein family 1; KEGG: scb:SCAB_7331 putative substrate-binding transport lipoprotein. (457 aa)    
Predicted Functional Partners:
Celf_0883
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: scb:SCAB_7341 putative integral membrane transport protein.
 
   0.938
Celf_0884
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: scb:SCAB_7351 putative integral membrane transport protein.
 
 0.936
Celf_0528
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: carbohydrate ABC transporter membrane protein.
 
   0.839
Celf_0529
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: carbohydrate ABC transporter membrane protein.
 
 0.838
Celf_0885
Beta-galactosidase; KEGG: scb:SCAB_7361 putative beta-galactosidase; PFAM: Glycoside hydrolase family 42 domain protein; Beta-galactosidase trimerisation domain protein.
 
     0.650
Celf_0798
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bde:BDP_1704 sugar-binding protein of ABC transporter system, permease.
  
 
 0.550
Celf_1349
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: jde:Jden_0236 binding-protein-dependent transport systems inner membrane component.
  
 
 0.550
Celf_2922
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bcv:Bcav_1097 binding-protein-dependent transport systems inner membrane component.
  
 
 0.550
Celf_1289
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: binding-protein-dependent transport systems inner membrane component.
 
 
 0.549
Celf_0610
KEGG: ABC transporter related protein; PFAM: ABC transporter related; Transport-associated OB domain-containing protein; SMART: AAA ATPase; Belongs to the ABC transporter superfamily.
  
 
 0.539
Your Current Organism:
Cellulomonas fimi
NCBI taxonomy Id: 590998
Other names: C. fimi ATCC 484, Cellulomonas fimi ATCC 484, Cellulomonas fimi DSM 20113, Cellulomonas fimi str. ATCC 484, Cellulomonas fimi strain ATCC 484
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