STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Celf_0904PFAM: glycoside hydrolase family 43; KEGG: jde:Jden_0516 arabinan endo-1,5-alpha-L-arabinosidase. (369 aa)    
Predicted Functional Partners:
Celf_0903
alpha-L-arabinofuranosidase domain protein; KEGG: xce:Xcel_0412 alpha-N-arabinofuranosidase; PFAM: alpha-L-arabinofuranosidase domain protein; SMART: alpha-L-arabinofuranosidase domain protein.
 
  
 0.835
Celf_1219
PFAM: protein of unknown function DUF1680; KEGG: protein of unknown function DUF1680.
 
   
 0.771
Celf_0902
PFAM: extracellular solute-binding protein family 1; KEGG: jde:Jden_0513 extracellular solute-binding protein family 1.
 
     0.732
Celf_1745
PFAM: glycoside hydrolase family 43; KEGG: sli:Slin_1420 glycoside hydrolase family 43; Belongs to the glycosyl hydrolase 43 family.
  
     0.714
Celf_1746
Alpha-N-arabinofuranosidase; PFAM: alpha-L-arabinofuranosidase domain protein; KEGG: xce:Xcel_2782 alpha-N-arabinofuranosidase; SMART: alpha-L-arabinofuranosidase domain protein.
 
  
 0.676
Celf_3643
KEGG: xylan 1,4-beta-xylosidase; PFAM: glycoside hydrolase family 43; Belongs to the glycosyl hydrolase 43 family.
  
     0.665
Celf_0788
PFAM: glycoside hydrolase family 43; Ig domain protein; KEGG: blo:BL0420 hypothetical protein.
  
     0.663
Celf_3268
KEGG: alpha-glucuronidase; PFAM: Glycosyl hydrolase 67 middle domain protein; glycosyl hydrolase 67 C-teriminal domain protein.
 
   
 0.636
Celf_3623
KEGG: kra:Krad_3464 putative alpha-galactosidase.
  
     0.604
Celf_0398
KEGG: pectate lyase; PFAM: Pectate lyase; Ricin B lectin; SMART: Ricin B lectin.
 
     0.593
Your Current Organism:
Cellulomonas fimi
NCBI taxonomy Id: 590998
Other names: C. fimi ATCC 484, Cellulomonas fimi ATCC 484, Cellulomonas fimi DSM 20113, Cellulomonas fimi str. ATCC 484, Cellulomonas fimi strain ATCC 484
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