STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Celf_1063Regulatory protein MarR; KEGG: bcv:Bcav_0501 transcriptional regulator, MarR family; PFAM: regulatory protein MarR; SMART: regulatory protein MarR. (243 aa)    
Predicted Functional Partners:
Celf_1064
KEGG: bcv:Bcav_0500 hypothetical protein.
 
     0.873
Celf_0388
PFAM: regulatory protein TetR; KEGG: ami:Amir_3979 transcriptional regulator, TetR family.
  
    0.650
Celf_0588
KEGG: bcv:Bcav_4067 membrane protein of uknown function UCP014873.
  
     0.528
Celf_0817
PFAM: regulatory protein TetR; KEGG: cwo:Cwoe_5092 transcriptional regulator, TetR family.
  
    0.517
Celf_3489
PFAM: aminoglycoside phosphotransferase; KEGG: Mn2+dependent serine/threonine protein kinase.
  
     0.470
Celf_0389
KEGG: sgr:SGR_309 hypothetical protein.
  
     0.455
Celf_0587
KEGG: bcv:Bcav_0753 hypothetical protein.
  
     0.429
Celf_2479
KEGG: sen:SACE_0696 hypothetical protein.
  
     0.429
Celf_0436
PFAM: Methyltransferase type 11; KEGG: bfa:Bfae_07800 methyltransferase family protein.
  
     0.425
Celf_3672
PFAM: ATP-binding region ATPase domain protein; KEGG: bcv:Bcav_4034 putative anti-sigma regulatory factor, serine/threonine protein kinase.
  
     0.410
Your Current Organism:
Cellulomonas fimi
NCBI taxonomy Id: 590998
Other names: C. fimi ATCC 484, Cellulomonas fimi ATCC 484, Cellulomonas fimi DSM 20113, Cellulomonas fimi str. ATCC 484, Cellulomonas fimi strain ATCC 484
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.