STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Celf_1090KEGG: kra:Krad_2000 putative ABC transporter transmembrane protein. (285 aa)    
Predicted Functional Partners:
Celf_1089
KEGG: kra:Krad_2001 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase.
     0.945
Celf_2964
KEGG: ABC transporter related protein; PFAM: ABC transporter related; SMART: AAA ATPase.
 
     0.769
Celf_0423
KEGG: kra:Krad_1977 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase.
 
     0.754
Celf_1091
Integral membrane sensor signal transduction histidine kinase; PFAM: histidine kinase dimerisation and phosphoacceptor region; ATP-binding region ATPase domain protein; KEGG: kra:Krad_1999 integral membrane sensor signal transduction histidine kinase.
 
    0.750
Celf_0425
KEGG: integral membrane protein.
  
     0.742
Celf_1092
KEGG: kra:Krad_1998 two component transcriptional regulator, LuxR family; PFAM: response regulator receiver; regulatory protein LuxR; SMART: response regulator receiver; regulatory protein LuxR.
       0.689
Celf_1314
KEGG: putative ABC transporter integral membrane protein.
 
   0.538
Celf_1088
KEGG: hypothetical protein.
       0.445
Celf_1272
Regulatory protein MarR; KEGG: transcriptional regulator, MarR family; PFAM: regulatory protein MarR; SMART: regulatory protein MarR.
  
     0.412
Celf_2173
KEGG: hypothetical protein.
  
     0.406
Your Current Organism:
Cellulomonas fimi
NCBI taxonomy Id: 590998
Other names: C. fimi ATCC 484, Cellulomonas fimi ATCC 484, Cellulomonas fimi DSM 20113, Cellulomonas fimi str. ATCC 484, Cellulomonas fimi strain ATCC 484
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