STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Celf_1154PFAM: protein of unknown function DUF1003; KEGG: protein of unknown function DUF1003. (192 aa)    
Predicted Functional Partners:
Celf_1155
PFAM: MgtE intracellular region; CBS domain containing protein; KEGG: MgtE intracellular region.
 
     0.955
Celf_1153
ATPase-like, ParA/MinD; Binds and transfers iron-sulfur (Fe-S) clusters to target apoproteins. Can hydrolyze ATP; Belongs to the Mrp/NBP35 ATP-binding proteins family.
       0.713
Celf_1156
KEGG: hypothetical protein.
       0.702
Celf_2146
PFAM: nucleic acid binding OB-fold tRNA/helicase-type; KEGG: nucleic acid binding OB-fold tRNA/helicase-type.
  
     0.458
Celf_1151
TIGRFAM: galactose-1-phosphate uridylyltransferase; KEGG: galactose-1-phosphate uridylyltransferase; PFAM: galactose-1-phosphate uridyl transferase domain protein.
       0.453
Celf_1152
KEGG: transcriptional regulator, DeoR family; PFAM: regulatory protein DeoR; SMART: regulatory protein DeoR.
       0.451
Celf_1150
KEGG: galactokinase; TIGRFAM: galactokinase; PFAM: Galactokinase galactose-binding domain; GHMP kinase; GHMP kinase domain protein; Belongs to the GHMP kinase family. GalK subfamily.
       0.448
Celf_2352
KEGG: hypothetical protein.
 
     0.406
Your Current Organism:
Cellulomonas fimi
NCBI taxonomy Id: 590998
Other names: C. fimi ATCC 484, Cellulomonas fimi ATCC 484, Cellulomonas fimi DSM 20113, Cellulomonas fimi str. ATCC 484, Cellulomonas fimi strain ATCC 484
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