STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Celf_1198PFAM: Luciferase-like, subgroup; KEGG: flavin-dependent oxidoreductase, F420-dependent methylene-tetrahydromethanopterin reductase. (372 aa)    
Predicted Functional Partners:
Celf_1197
Alkanesulfonate monooxygenase; KEGG: flavin-dependent oxidoreductase, F420-dependent methylene-tetrahydromethanopterin reductase; PFAM: Luciferase-like, subgroup.
 
     0.812
Celf_1196
Luciferase family oxidoreductase, group 1; KEGG: flavin-dependent oxidoreductase, F420-dependent methylene-tetrahydromethanopterin reductase; TIGRFAM: luciferase family oxidoreductase, group 1; PFAM: Luciferase-like, subgroup.
   
0.761
Celf_1194
KEGG: amino acid-binding protein; PFAM: extracellular solute-binding protein family 3; SMART: extracellular solute-binding protein family 3.
    0.613
Celf_1199
PFAM: Methyltransferase type 12; KEGG: methyltransferase type 12.
       0.605
Celf_1200
PFAM: metallophosphoesterase; KEGG: metallophosphoesterase.
       0.605
Celf_0819
PFAM: NADPH-dependent FMN reductase; KEGG: NADPH-dependent FMN reductase.
   0.597
Celf_1283
KEGG: bcv:Bcav_2861 luciferase-like monooxygenase; TIGRFAM: luciferase family oxidoreductase, group 1; PFAM: Luciferase-like, subgroup.
 
    0.540
Celf_1195
PFAM: FAD dependent oxidoreductase; KEGG: glycine/D-amino acid oxidase, deaminating.
       0.482
Celf_1190
TIGRFAM: Nitrilotriacetate monooxygenase component A/pristinamycin IIA synthase subunit A; KEGG: flavin-dependent oxidoreductase, F420-dependent methylene-tetrahydromethanopterin reductase.
 
    0.445
Celf_1201
PFAM: ANTAR domain protein; GAF domain protein; KEGG: nml:Namu_1754 ANTAR domain protein with unknown sensor.
       0.407
Your Current Organism:
Cellulomonas fimi
NCBI taxonomy Id: 590998
Other names: C. fimi ATCC 484, Cellulomonas fimi ATCC 484, Cellulomonas fimi DSM 20113, Cellulomonas fimi str. ATCC 484, Cellulomonas fimi strain ATCC 484
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