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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Celf_1237KEGG: kfl:Kfla_6963 helix-turn-helix type 11 domain protein. (323 aa)    
Predicted Functional Partners:
Celf_0400
KEGG: rha:RHA1_ro06727 DeoR family transcriptional regulator.
  
     0.722
Celf_1239
PFAM: ABC-2 type transporter; KEGG: xce:Xcel_3137 ABC-2 type transporter.
 
     0.617
Celf_1955
KEGG: transcriptional regulator protein-like protein.
 
     0.574
Celf_1238
KEGG: nml:Namu_0095 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase.
       0.546
Celf_1956
KEGG: transcriptional regulator protein-like protein.
 
     0.407
Your Current Organism:
Cellulomonas fimi
NCBI taxonomy Id: 590998
Other names: C. fimi ATCC 484, Cellulomonas fimi ATCC 484, Cellulomonas fimi DSM 20113, Cellulomonas fimi str. ATCC 484, Cellulomonas fimi strain ATCC 484
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.