STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Celf_1271KEGG: family 10 glycoside hydrolase; PFAM: glycoside hydrolase family 10; cellulose-binding family II; SMART: glycoside hydrolase family 10; cellulose-binding family II. (510 aa)    
Predicted Functional Partners:
Celf_3155
Alpha-N-arabinofuranosidase; PFAM: Ricin B lectin; KEGG: scb:SCAB_79241 putative arabinofuranosidase; SMART: Ricin B lectin.
 
 0.979
Celf_3688
PFAM: N-acylglucosamine 2-epimerase; KEGG: protein of unknown function DUF255.
  
 
 0.873
Celf_0398
KEGG: pectate lyase; PFAM: Pectate lyase; Ricin B lectin; SMART: Ricin B lectin.
 
 0.816
Celf_1340
KEGG: pectate lyase; PFAM: Pectate lyase; Ricin B lectin; SMART: Ricin B lectin.
 
 0.797
Celf_0374
KEGG: glycoside hydrolase family 11; PFAM: glycoside hydrolase family 11; cellulose-binding family II; polysaccharide deacetylase; SMART: cellulose-binding family II; Belongs to the glycosyl hydrolase 11 (cellulase G) family.
   
 0.778
Celf_3157
KEGG: glycoside hydrolase family 43; PFAM: glycoside hydrolase family 43; Ricin B lectin; SMART: Ricin B lectin.
  
 0.778
Celf_1745
PFAM: glycoside hydrolase family 43; KEGG: sli:Slin_1420 glycoside hydrolase family 43; Belongs to the glycosyl hydrolase 43 family.
  
 0.705
Celf_3643
KEGG: xylan 1,4-beta-xylosidase; PFAM: glycoside hydrolase family 43; Belongs to the glycosyl hydrolase 43 family.
  
 0.667
Celf_1481
PFAM: glycoside hydrolase family 9; KEGG: glycoside hydrolase family 9.
     0.650
Celf_1230
PFAM: 1, 4-beta cellobiohydrolase; KEGG: ace:Acel_0135 cellulase; Belongs to the glycosyl hydrolase family 6.
     0.632
Your Current Organism:
Cellulomonas fimi
NCBI taxonomy Id: 590998
Other names: C. fimi ATCC 484, Cellulomonas fimi ATCC 484, Cellulomonas fimi DSM 20113, Cellulomonas fimi str. ATCC 484, Cellulomonas fimi strain ATCC 484
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