STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Celf_1307PFAM: WD40 repeat, subgroup; KEGG: gob:Gobs_1160 WD40 repeat, subgroup. (1204 aa)    
Predicted Functional Partners:
Celf_0752
KEGG: kra:Krad_2048 hypothetical protein.
  
 
 0.950
Celf_1308
KEGG: gob:Gobs_1155 hypothetical protein.
 
     0.947
alaS
alanyl-tRNA synthetase; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain.
   
 0.907
Celf_0110
KEGG: sgr:SGR_6341 hypothetical protein.
  
 0.851
Celf_0389
KEGG: sgr:SGR_309 hypothetical protein.
   
 0.792
Celf_3751
Hypothetical protein; KEGG: gob:Gobs_2142 40-residue YVTN family beta-propeller repeat protein.
 
     0.748
Celf_0893
KEGG: histone deacetylase; PFAM: histone deacetylase superfamily.
    
 0.741
Celf_0046
KEGG: sro:Sros_5367 hypothetical protein.
   
 0.704
Celf_1672
KEGG: xce:Xcel_1337 hypothetical protein.
   
 0.704
Celf_3446
KEGG: hypothetical protein.
   
 0.704
Your Current Organism:
Cellulomonas fimi
NCBI taxonomy Id: 590998
Other names: C. fimi ATCC 484, Cellulomonas fimi ATCC 484, Cellulomonas fimi DSM 20113, Cellulomonas fimi str. ATCC 484, Cellulomonas fimi strain ATCC 484
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.