STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Celf_1347PFAM: extracellular solute-binding protein family 1; KEGG: xce:Xcel_1045 extracellular solute-binding protein family 1. (442 aa)    
Predicted Functional Partners:
Celf_1348
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: jde:Jden_0235 binding-protein-dependent transport systems inner membrane component.
 
 0.987
Celf_1349
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: jde:Jden_0236 binding-protein-dependent transport systems inner membrane component.
 
 0.986
Celf_0610
KEGG: ABC transporter related protein; PFAM: ABC transporter related; Transport-associated OB domain-containing protein; SMART: AAA ATPase; Belongs to the ABC transporter superfamily.
  
 0.896
Celf_2921
KEGG: ABC transporter related protein; PFAM: ABC transporter related; SMART: AAA ATPase; Belongs to the ABC transporter superfamily.
  
 0.896
Celf_1346
PFAM: ROK family protein; KEGG: xce:Xcel_1044 ROK family protein.
    0.778
Celf_1289
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: binding-protein-dependent transport systems inner membrane component.
 
 
 0.643
Celf_1350
PFAM: ROK family protein; KEGG: xce:Xcel_1048 ROK family protein.
 
    0.636
Celf_1288
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: binding-protein-dependent transport systems inner membrane component.
 
   0.621
nagB
Glucosamine-6-phosphate isomerase; Catalyzes the reversible isomerization-deamination of glucosamine 6-phosphate (GlcN6P) to form fructose 6-phosphate (Fru6P) and ammonium ion; Belongs to the glucosamine/galactosamine-6-phosphate isomerase family. NagB subfamily.
       0.575
Celf_1278
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: kfl:Kfla_4674 binding-protein-dependent transport systems inner membrane component.
 
 
 0.539
Your Current Organism:
Cellulomonas fimi
NCBI taxonomy Id: 590998
Other names: C. fimi ATCC 484, Cellulomonas fimi ATCC 484, Cellulomonas fimi DSM 20113, Cellulomonas fimi str. ATCC 484, Cellulomonas fimi strain ATCC 484
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