STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Celf_1473PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: haloacid dehalogenase domain protein hydrolase. (222 aa)    
Predicted Functional Partners:
tmk
Thymidylate kinase; Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis; Belongs to the thymidylate kinase family.
      0.903
moaA
Molybdenum cofactor biosynthesis protein A; Catalyzes the cyclization of GTP to (8S)-3',8-cyclo-7,8- dihydroguanosine 5'-triphosphate.
  
    0.704
Celf_3744
KEGG: protein tyrosine phosphatase; PFAM: Protein-tyrosine phosphatase, low molecular weight; SMART: Protein-tyrosine phosphatase, low molecular weight.
    
 0.696
Celf_3730
Molybdenum cofactor synthesis domain protein; KEGG: kse:Ksed_19280 molybdopterin adenylyltransferase; TIGRFAM: molybdenum cofactor synthesis domain protein; PFAM: molybdopterin binding domain.
 
 
    0.629
ribB
GTP cyclohydrolase II; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; Belongs to the GTP cyclohydrolase II family. In the N-terminal section; belongs to the DHBP synthase family.
  
  
 0.611
Celf_1472
KEGG: ach:Achl_0639 transcriptional regulator, MerR family; PFAM: TipAS antibiotic-recognition domain-containing protein; regulatory protein MerR; SMART: regulatory protein MerR.
       0.590
Celf_1475
KEGG: putative NadR-like transcriptional regulator.
  
    0.567
Celf_1476
PFAM: ATPase associated with various cellular activities AAA_3; KEGG: ATPase associated with various cellular activities AAA_3.
  
  
 0.561
Celf_1480
PFAM: AMP-dependent synthetase and ligase; KEGG: AMP-dependent synthetase and ligase.
       0.561
Celf_1474
KEGG: nicotinamide mononucleotide transporter PnuC; TIGRFAM: nicotinamide mononucleotide transporter PnuC; PFAM: Nicotinamide mononucleotide transporter PnuC.
     
 0.560
Your Current Organism:
Cellulomonas fimi
NCBI taxonomy Id: 590998
Other names: C. fimi ATCC 484, Cellulomonas fimi ATCC 484, Cellulomonas fimi DSM 20113, Cellulomonas fimi str. ATCC 484, Cellulomonas fimi strain ATCC 484
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