STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Celf_1508PFAM: Protein of unknown function DUF2469; KEGG: protein of unknown function DUF2469. (113 aa)    
Predicted Functional Partners:
whiB-4
Transcription factor WhiB; Acts as a transcriptional regulator. Probably redox- responsive. The apo- but not holo-form probably binds DNA.
  
     0.767
Celf_1506
KEGG: signal peptidase I; TIGRFAM: signal peptidase I; PFAM: Peptidase S24/S26A/S26B, conserved region; Belongs to the peptidase S26 family.
       0.763
whiB-3
Transcription factor WhiB; Acts as a transcriptional regulator. Probably redox- responsive. The apo- but not holo-form probably binds DNA.
  
     0.760
Celf_1507
Ribonuclease H; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids.
       0.742
Celf_3392
PFAM: transcription factor WhiB; KEGG: transcription factor WhiB.
  
     0.727
Celf_1509
PFAM: Uncharacterised protein family UPF0102; KEGG: protein of unknown function UPF0102; Belongs to the UPF0102 family.
       0.672
Celf_1510
TIGRFAM: Mg chelatase, subunit ChlI; PFAM: magnesium chelatase ChlI subunit; KEGG: Mg chelatase, subunit ChlI; SMART: AAA ATPase.
       0.672
Celf_1511
PFAM: SMF family protein; KEGG: DNA protecting protein DprA.
       0.672
Celf_1937
SMART: regulatory protein MerR; KEGG: transcriptional regulator, MerR family.
  
     0.666
Celf_0051
Helix-turn-helix domain protein; KEGG: fre:Franean1_4921 XRE family transcriptional regulator; PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein.
  
     0.629
Your Current Organism:
Cellulomonas fimi
NCBI taxonomy Id: 590998
Other names: C. fimi ATCC 484, Cellulomonas fimi ATCC 484, Cellulomonas fimi DSM 20113, Cellulomonas fimi str. ATCC 484, Cellulomonas fimi strain ATCC 484
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