STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Celf_1566KEGG: type I phosphodiesterase/nucleotide pyrophosphatase. (695 aa)    
Predicted Functional Partners:
Celf_1567
KEGG: hypothetical protein.
 
     0.938
Celf_1565
KEGG: hypothetical protein.
       0.752
Celf_1564
KEGG: DEAD/H associated domain protein; PFAM: DEAD/H associated domain protein; DEAD/DEAH box helicase domain protein; helicase domain protein; SMART: DEAD-like helicase; helicase domain protein.
       0.537
Celf_1344
KEGG: krh:KRH_05810 hypothetical protein.
  
     0.510
Celf_3363
KEGG: hypothetical protein.
 
    0.499
Celf_0547
KEGG: hypothetical protein.
 
     0.494
Celf_0513
PFAM: ATP-binding region ATPase domain protein; KEGG: signal transduction histidine kinase, LytS.
  
     0.486
Celf_0109
KEGG: hypothetical protein.
 
 
 0.484
Celf_2886
KEGG: putative integral membrane protein.
  
 
 0.474
Celf_0272
KEGG: saq:Sare_4058 phospholipid/glycerol acyltransferase; PFAM: phospholipid/glycerol acyltransferase; SMART: phospholipid/glycerol acyltransferase.
  
    0.468
Your Current Organism:
Cellulomonas fimi
NCBI taxonomy Id: 590998
Other names: C. fimi ATCC 484, Cellulomonas fimi ATCC 484, Cellulomonas fimi DSM 20113, Cellulomonas fimi str. ATCC 484, Cellulomonas fimi strain ATCC 484
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