STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Celf_1642KEGG: hypothetical protein. (130 aa)    
Predicted Functional Partners:
Celf_2113
PFAM: AFG1-family ATPase; KEGG: AFG1-family ATPase.
  
     0.775
Celf_2868
Manually curated; TIGRFAM: succinate dehydrogenase, cytochrome b556 subunit; KEGG: succinate dehydrogenase subunit C; PFAM: succinate dehydrogenase cytochrome b subunit.
  
     0.775
Celf_2869
KEGG: succinate dehydrogenase hydrophobic anchor subunit-like protein.
  
     0.775
Celf_1979
KEGG: hypothetical protein.
  
     0.774
Celf_1544
KEGG: hypothetical protein.
  
     0.773
Celf_2871
TIGRFAM: succinate dehydrogenase and fumarate reductase iron-sulfur protein; KEGG: succinate dehydrogenase and fumarate reductase iron-sulfur protein; PFAM: ferredoxin.
  
     0.724
Celf_2870
KEGG: succinate dehydrogenase or fumarate reductase, flavoprotein subunit; TIGRFAM: succinate dehydrogenase, flavoprotein subunit; succinate dehydrogenase or fumarate reductase, flavoprotein subunit; PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein.
  
     0.690
Celf_1643
KEGG: catalase; PFAM: Catalase related subgroup; Catalase domain protein; Belongs to the catalase family.
       0.507
Celf_1644
PFAM: ferric-uptake regulator; KEGG: ferric uptake regulator, Fur family; Belongs to the Fur family.
       0.422
Celf_2149
KEGG: hypothetical protein.
  
     0.419
Your Current Organism:
Cellulomonas fimi
NCBI taxonomy Id: 590998
Other names: C. fimi ATCC 484, Cellulomonas fimi ATCC 484, Cellulomonas fimi DSM 20113, Cellulomonas fimi str. ATCC 484, Cellulomonas fimi strain ATCC 484
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.