STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Celf_1700PFAM: transcriptional regulator PadR family protein; KEGG: bfa:Bfae_04310 transcriptional regulator, PadR family. (111 aa)    
Predicted Functional Partners:
Celf_1701
KEGG: bfa:Bfae_04300 hypothetical protein.
 
     0.950
Celf_1061
PFAM: transcriptional regulator PadR family protein; KEGG: bcv:Bcav_3065 transcriptional regulator, PadR-like family.
  
     0.641
Celf_3019
PFAM: transcriptional regulator PadR family protein; KEGG: transcriptional regulator, PadR-like family.
  
     0.576
Celf_1697
Cysteine desulfurase, SufS subfamily; Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine.
       0.473
Celf_1698
KEGG: SUF system FeS assembly protein, NifU family; TIGRFAM: SUF system FeS assembly protein, NifU family; PFAM: nitrogen-fixing NifU domain protein.
       0.473
Celf_1699
PFAM: protein of unknown function DUF59; KEGG: protein of unknown function DUF59.
       0.473
Celf_3223
PFAM: transcriptional regulator PadR family protein; KEGG: xce:Xcel_1146 transcriptional regulator, PadR-like family.
  
     0.411
Your Current Organism:
Cellulomonas fimi
NCBI taxonomy Id: 590998
Other names: C. fimi ATCC 484, Cellulomonas fimi ATCC 484, Cellulomonas fimi DSM 20113, Cellulomonas fimi str. ATCC 484, Cellulomonas fimi strain ATCC 484
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