STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Celf_1709PFAM: BioY protein; KEGG: BioY protein. (208 aa)    
Predicted Functional Partners:
Celf_1707
PFAM: cobalt transport protein; KEGG: cobalt transport protein.
 
 0.999
Celf_1708
KEGG: ABC transporter related protein; PFAM: ABC transporter related; SMART: AAA ATPase.
 
 
 0.999
Celf_2384
PFAM: cobalt transport protein; KEGG: ABC-type cobalt transport system, permease component CbiQ.
  
 0.973
Celf_2839
KEGG: biotin/acetyl-CoA-carboxylase ligase; TIGRFAM: biotin/acetyl-CoA-carboxylase ligase; PFAM: biotin/lipoate A/B protein ligase; biotin protein ligase domain protein.
 
   
 0.690
Celf_1710
KEGG: ABC transporter related protein; PFAM: ABC transporter related; SMART: AAA ATPase.
       0.559
Celf_1706
PFAM: protein of unknown function zinc metallopeptidase; KEGG: protein of unknown function zinc metallopeptidase putative.
       0.557
Celf_2846
PFAM: Carbamoyl-phosphate synthase L chain ATP-binding; Carbamoyl-phosphate synthetase large chain domain protein; biotin carboxylase domain protein; biotin/lipoyl attachment domain-containing protein; KEGG: carbamoyl-phosphate synthase L chain ATP-binding protein.
 
     0.519
recA
recA protein; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family.
     
 0.518
Celf_2269
Beta-ketoacyl synthase; Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP.
 
     0.512
Celf_2558
PFAM: Carbamoyl-phosphate synthase L chain ATP-binding; Carbamoyl-phosphate synthetase large chain domain protein; biotin carboxylase domain protein; biotin/lipoyl attachment domain-containing protein; KEGG: rha:RHA1_ro06096 acetyl-CoA carboxylase biotin carboxylase subunit.
 
     0.454
Your Current Organism:
Cellulomonas fimi
NCBI taxonomy Id: 590998
Other names: C. fimi ATCC 484, Cellulomonas fimi ATCC 484, Cellulomonas fimi DSM 20113, Cellulomonas fimi str. ATCC 484, Cellulomonas fimi strain ATCC 484
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