STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Celf_1721KEGG: ABC transporter related protein; PFAM: ABC transporter related; SMART: AAA ATPase. (262 aa)    
Predicted Functional Partners:
Celf_0537
Ribonuclease H; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids.
      0.709
Celf_1720
KEGG: hypothetical protein.
       0.660
Celf_1722
PFAM: protein of unknown function DUF107; KEGG: protein of unknown function DUF107.
       0.640
Celf_1723
KEGG: band 7 protein; PFAM: band 7 protein; SMART: band 7 protein.
       0.565
Celf_2326
KEGG: ABC transporter related protein; PFAM: ABC transporter related; SMART: AAA ATPase.
 
    
0.484
Celf_2150
KEGG: hypothetical protein.
  
     0.475
nucS
Protein of unknown function DUF91; Cleaves both 3' and 5' ssDNA extremities of branched DNA structures; Belongs to the NucS endonuclease family.
 
     0.461
Celf_1730
PFAM: tRNA/rRNA methyltransferase (SpoU); KEGG: tRNA/rRNA methyltransferase (SpoU).
       0.445
Celf_1788
KEGG: tRNA (adenine-N(1)-)-methyltransferase; PFAM: tRNA methyltransferase complex GCD14 subunit.
 
     0.443
Celf_1937
SMART: regulatory protein MerR; KEGG: transcriptional regulator, MerR family.
  
     0.443
Your Current Organism:
Cellulomonas fimi
NCBI taxonomy Id: 590998
Other names: C. fimi ATCC 484, Cellulomonas fimi ATCC 484, Cellulomonas fimi DSM 20113, Cellulomonas fimi str. ATCC 484, Cellulomonas fimi strain ATCC 484
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