STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Celf_1785Manually curated; TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; KEGG: HAD-superfamily hydrolase, subfamily IA, variant 3; PFAM: Haloacid dehalogenase domain protein hydrolase. (240 aa)    
Predicted Functional Partners:
Celf_1788
KEGG: tRNA (adenine-N(1)-)-methyltransferase; PFAM: tRNA methyltransferase complex GCD14 subunit.
     0.938
hisE
KEGG: xce:Xcel_1730 phosphoribosyl-ATP diphosphatase; TIGRFAM: phosphoribosyl-ATP diphosphatase; PFAM: Phosphoribosyl-ATP pyrophosphohydrolase-like.
      0.903
Celf_1784
PFAM: filamentation induced by cAMP protein Fic; KEGG: hypothetical protein.
       0.492
Celf_1781
KEGG: protein of unknown function DUF75.
       0.459
Celf_1787
PFAM: peptidase M50; KEGG: peptidase M50; Belongs to the peptidase M50B family.
 
    0.438
Celf_1886
Beta-phosphoglucomutase family hydrolase; KEGG: mdi:METDI0534 putative glycoside hydrolase or sugar phosphorilase; TIGRFAM: beta-phosphoglucomutase family hydrolase; HAD-superfamily hydrolase, subfamily IA, variant 3; PFAM: glycoside hydrolase family 65 central catalytic; glycoside hydrolase family 65 domain protein; Haloacid dehalogenase domain protein hydrolase.
 
  
0.421
Your Current Organism:
Cellulomonas fimi
NCBI taxonomy Id: 590998
Other names: C. fimi ATCC 484, Cellulomonas fimi ATCC 484, Cellulomonas fimi DSM 20113, Cellulomonas fimi str. ATCC 484, Cellulomonas fimi strain ATCC 484
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.