STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Celf_1984KEGG: cph:Cpha266_0056 peptidase M12A, astacin; PFAM: peptidase M12A astacin; SMART: peptidase metallopeptidase. (294 aa)    
Predicted Functional Partners:
Celf_0163
KEGG: hypothetical protein.
  
    0.688
Celf_1924
KEGG: ami:Amir_3216 glycoside hydrolase family 5; PFAM: glycoside hydrolase family 5; Fibronectin type III domain protein; cellulose-binding family II; SMART: cellulose-binding family II; Fibronectin type III domain protein.
    
   0.571
Celf_1983
Hypothetical protein; KEGG: ami:Amir_3197 acyl transferase.
       0.545
Celf_1985
TIGRFAM: diguanylate cyclase; PFAM: EAL domain protein; GGDEF domain containing protein; KEGG: diguanylate cyclase/phosphodiesterase; SMART: EAL domain protein; GGDEF domain containing protein.
       0.485
Celf_1402
KEGG: neprilysin; PFAM: peptidase M13; Peptidase M13, neprilysin-like.
 
    0.426
Your Current Organism:
Cellulomonas fimi
NCBI taxonomy Id: 590998
Other names: C. fimi ATCC 484, Cellulomonas fimi ATCC 484, Cellulomonas fimi DSM 20113, Cellulomonas fimi str. ATCC 484, Cellulomonas fimi strain ATCC 484
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.