STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Celf_2002KEGG: kra:Krad_3022 hypothetical protein. (246 aa)    
Predicted Functional Partners:
Celf_2005
PFAM: Type II secretion system F domain; KEGG: type II secretion system F domain protein.
  
  
 0.806
Celf_2001
KEGG: kra:Krad_3021 hypothetical protein.
     
 0.790
Celf_2003
KEGG: kra:Krad_3023 hypothetical protein.
       0.789
Celf_2007
KEGG: type II secretion system protein E; PFAM: type II secretion system protein E; General secretory system II protein E domain protein; SMART: AAA ATPase.
  
 
 0.785
Celf_1997
KEGG: peptidase A24A domain protein; PFAM: peptidase A24A domain protein; peptidase A24A prepilin type IV.
  
  
 0.718
Celf_2000
KEGG: hypothetical protein.
     
 0.548
Celf_2004
KEGG: kra:Krad_3025 secretory protein.
       0.511
Celf_1998
KEGG: hypothetical protein.
     
 0.507
Celf_1999
KEGG: prepilin-type cleavage/methylation-like protein.
       0.493
Celf_1995
PFAM: Fimbrial assembly family protein; KEGG: fimbrial assembly family protein.
  
  
 0.461
Your Current Organism:
Cellulomonas fimi
NCBI taxonomy Id: 590998
Other names: C. fimi ATCC 484, Cellulomonas fimi ATCC 484, Cellulomonas fimi DSM 20113, Cellulomonas fimi str. ATCC 484, Cellulomonas fimi strain ATCC 484
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.