STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Celf_2318PFAM: PfkB domain protein; KEGG: xce:Xcel_1009 PfkB domain protein. (301 aa)    
Predicted Functional Partners:
hisA
TIGRFAM: bifunctional HisA/TrpF protein; KEGG: bifunctional HisA/TrpF protein; PFAM: histidine biosynthesis protein.
  
  
 0.674
Celf_2317
Alpha-amylase; PFAM: alpha amylase catalytic region; alpha amylase all-beta; KEGG: jde:Jden_1927 alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain; alpha amylase all-beta.
   
 
 0.564
Celf_2744
PFAM: Xylose isomerase domain-containing protein TIM barrel; AP endonuclease 2 domain protein; KEGG: bcv:Bcav_1355 xylose isomerase domain protein TIM barrel.
  
  
 0.497
Celf_3296
PFAM: Xylose isomerase domain-containing protein TIM barrel; KEGG: xce:Xcel_0895 xylose isomerase domain protein TIM barrel.
  
  
 0.497
Celf_2832
PFAM: iron-containing alcohol dehydrogenase; Aldehyde Dehydrogenase; KEGG: iron-containing alcohol dehydrogenase; In the C-terminal section; belongs to the iron-containing alcohol dehydrogenase family.
  
 
 0.468
Celf_2311
KEGG: glycosidase; PFAM: alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain.
 
 
 
 0.466
Celf_1811
KEGG: glutamate synthase (ferredoxin); PFAM: ferredoxin-dependent glutamate synthase; glutamine amidotransferase class-II; glutamate synthase; glutamate synthase alpha subunit domain protein.
    
 
 0.457
Celf_3291
KEGG: 2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase; TIGRFAM: 2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase; PFAM: KDPG and KHG aldolase.
 
  
 0.418
Celf_0545
PFAM: FAD linked oxidase domain protein; protein of unknown function DUF224 cysteine-rich region domain protein; KEGG: FAD linked oxidase domain protein.
 
 
 
 0.413
Celf_1286
PFAM: Aldehyde Dehydrogenase; Proline dehydrogenase; KEGG: NAD-dependent aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.
  
 
 0.407
Your Current Organism:
Cellulomonas fimi
NCBI taxonomy Id: 590998
Other names: C. fimi ATCC 484, Cellulomonas fimi ATCC 484, Cellulomonas fimi DSM 20113, Cellulomonas fimi str. ATCC 484, Cellulomonas fimi strain ATCC 484
Server load: low (26%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.