STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Celf_2406KEGG: bcv:Bcav_1358 hypothetical protein. (425 aa)    
Predicted Functional Partners:
Celf_2407
KEGG: phosphoesterase PA-phosphatase related protein; PFAM: phosphoesterase PA-phosphatase related; SMART: phosphoesterase PA-phosphatase related.
       0.762
Celf_0414
PFAM: LexA DNA-binding domain protein; KEGG: LexA DNA-binding domain protein.
  
     0.635
Celf_0817
PFAM: regulatory protein TetR; KEGG: cwo:Cwoe_5092 transcriptional regulator, TetR family.
  
     0.503
Celf_1412
KEGG: GCN5-related protein N-acetyltransferase.
  
     0.492
Celf_2405
PFAM: short-chain dehydrogenase/reductase SDR; KEGG: gob:Gobs_0167 short-chain dehydrogenase/reductase SDR.
       0.451
Celf_0415
KEGG: sro:Sros_5145 hypothetical protein.
  
     0.415
pheT
KEGG: phenylalanyl-tRNA synthetase, beta subunit; TIGRFAM: phenylalanyl-tRNA synthetase, beta subunit; Belongs to the phenylalanyl-tRNA synthetase beta subunit family. Type 1 subfamily.
       0.410
Your Current Organism:
Cellulomonas fimi
NCBI taxonomy Id: 590998
Other names: C. fimi ATCC 484, Cellulomonas fimi ATCC 484, Cellulomonas fimi DSM 20113, Cellulomonas fimi str. ATCC 484, Cellulomonas fimi strain ATCC 484
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