STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Celf_2432TIGRFAM: ABC transporter, CydDC cysteine exporter (CydDC-E) family, permease/ATP-binding protein CydC; PFAM: ABC transporter related; KEGG: ABC transporter, CydDC cysteine exporter (CydDC-E) family, permease/ATP-binding protein CydC; SMART: AAA ATPase. (681 aa)    
Predicted Functional Partners:
Celf_2431
TIGRFAM: ABC transporter, CydDC cysteine exporter (CydDC-E) family, permease/ATP-binding protein CydD; PFAM: ABC transporter related; ABC transporter transmembrane region; KEGG: ABC transporter, CydDC cysteine exporter (CydDC-E) family, permease/ATP-binding protein CydD; SMART: AAA ATPase.
 
 
0.999
Celf_2430
KEGG: cytochrome d ubiquinol oxidase, subunit II; TIGRFAM: cytochrome d ubiquinol oxidase, subunit II; PFAM: cytochrome bd ubiquinol oxidase subunit II.
 
  
 0.995
Celf_2429
PFAM: cytochrome bd ubiquinol oxidase subunit I; KEGG: cytochrome bd ubiquinol oxidase subunit I.
  
 0.991
Celf_2433
KEGG: GAF sensor signal transduction histidine kinase; PFAM: histidine kinase dimerisation and phosphoacceptor region; GAF domain protein; ATP-binding region ATPase domain protein; SMART: GAF domain protein.
 
     0.915
Celf_1574
KEGG: ABC transporter related protein; PFAM: ABC transporter related; SMART: AAA ATPase.
 
     
0.888
Celf_2272
SMART: AAA ATPase; KEGG: msm:MSMEG_5645 hypothetical protein.
 
  
 0.821
metN
ABC transporter related protein; Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system.
 
     
0.807
Celf_1193
Manually curated; PFAM: ABC transporter related; KEGG: amino acid ABC transporter ATP-binding protein; SMART: AAA ATPase.
 
     
0.788
Celf_1375
KEGG: ABC transporter related protein; PFAM: ABC transporter related; SMART: AAA ATPase.
 
      0.677
Celf_2326
KEGG: ABC transporter related protein; PFAM: ABC transporter related; SMART: AAA ATPase.
 
     0.503
Your Current Organism:
Cellulomonas fimi
NCBI taxonomy Id: 590998
Other names: C. fimi ATCC 484, Cellulomonas fimi ATCC 484, Cellulomonas fimi DSM 20113, Cellulomonas fimi str. ATCC 484, Cellulomonas fimi strain ATCC 484
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