STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Celf_2450KEGG: hypothetical protein. (172 aa)    
Predicted Functional Partners:
Celf_0595
KEGG: putative lipoprotein.
  
     0.758
Celf_1637
KEGG: hypothetical protein.
  
     0.750
Celf_0259
PFAM: Cytochrome c oxidase caa3-type, assembly factor CtaG-related; KEGG: cytochrome c oxidase caa3-type, assembly factor CtaG-related protein.
  
     0.730
Celf_1168
PFAM: aminoglycoside phosphotransferase; KEGG: aminoglycoside phosphotransferase.
  
     0.721
Celf_2461
KEGG: hypothetical protein.
  
     0.691
Celf_2183
PFAM: cytochrome c class I; KEGG: cytochrome c class I.
  
     0.687
Celf_2184
PFAM: Rieske [2Fe-2S] iron-sulphur domain; KEGG: Rieske (2Fe-2S) iron-sulfur domain protein.
  
     0.671
thiL
Thiamine-monophosphate kinase; Catalyzes the ATP-dependent phosphorylation of thiamine- monophosphate (TMP) to form thiamine-pyrophosphate (TPP), the active form of vitamin B1; Belongs to the thiamine-monophosphate kinase family.
       0.669
Celf_1490
KEGG: hypothetical protein.
  
     0.666
Celf_3383
KEGG: hypothetical protein.
  
     0.636
Your Current Organism:
Cellulomonas fimi
NCBI taxonomy Id: 590998
Other names: C. fimi ATCC 484, Cellulomonas fimi ATCC 484, Cellulomonas fimi DSM 20113, Cellulomonas fimi str. ATCC 484, Cellulomonas fimi strain ATCC 484
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.