STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Celf_2459KEGG: hypothetical protein. (149 aa)    
Predicted Functional Partners:
Celf_3791
PFAM: major facilitator superfamily MFS_1; KEGG: major facilitator superfamily MFS_1.
  
     0.746
Celf_2461
KEGG: hypothetical protein.
       0.701
Celf_2037
KEGG: hypothetical protein.
  
     0.668
Celf_2460
KEGG: hypothetical protein.
       0.654
Celf_1720
KEGG: hypothetical protein.
  
     0.615
Celf_2462
KEGG: jde:Jden_1818 DNA binding domain protein, excisionase family; TIGRFAM: DNA binding domain protein, excisionase family; PFAM: Prophage CP4-57 regulatory.
       0.590
Celf_2777
PFAM: Apolipoprotein A1/A4/E; KEGG: hypothetical protein.
  
     0.554
Celf_3378
Domain of unknown function DUF1794; May play a role in the intracellular transport of hydrophobic ligands.
  
     0.552
Celf_1252
PFAM: protein of unknown function DUF344; KEGG: gbr:Gbro_2784 protein of unknown function DUF344.
     
 0.532
Celf_2378
PFAM: metallophosphoesterase; KEGG: metallophosphoesterase.
  
     0.530
Your Current Organism:
Cellulomonas fimi
NCBI taxonomy Id: 590998
Other names: C. fimi ATCC 484, Cellulomonas fimi ATCC 484, Cellulomonas fimi DSM 20113, Cellulomonas fimi str. ATCC 484, Cellulomonas fimi strain ATCC 484
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.