STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Celf_2479KEGG: sen:SACE_0696 hypothetical protein. (394 aa)    
Predicted Functional Partners:
Celf_0510
KEGG: nml:Namu_5023 transcriptional regulator, LuxR family; PFAM: regulatory protein LuxR; SMART: regulatory protein LuxR.
 
     0.473
Celf_2477
PFAM: ATPase associated with various cellular activities AAA_3; KEGG: ATPase associated with various cellular activities AAA_3.
       0.465
Celf_2478
PFAM: protein of unknown function DUF58; KEGG: protein of unknown function DUF58.
       0.465
Celf_1063
Regulatory protein MarR; KEGG: bcv:Bcav_0501 transcriptional regulator, MarR family; PFAM: regulatory protein MarR; SMART: regulatory protein MarR.
  
     0.429
Celf_0853
KEGG: xce:Xcel_3338 helix-turn-helix type 11 domain protein.
 
     0.423
Celf_0444
Regulatory protein MarR; KEGG: ami:Amir_4190 transcriptional regulator, MarR family; PFAM: regulatory protein MarR; SMART: regulatory protein MarR.
  
     0.417
Celf_3206
PFAM: Tetracyclin repressor domain-containing protein; regulatory protein TetR; KEGG: cwo:Cwoe_5652 transcriptional regulator, TetR family.
  
     0.415
Celf_1891
PFAM: peptidase M15B and M15C DD-carboxypeptidase VanY/endolysin; KEGG: sna:Snas_6027 peptidase M15B and M15C dd-carboxypeptidase VanY/endolysin.
  
     0.408
Celf_3187
Hypothetical protein; KEGG: scl:sce8751 putative protease; Belongs to the peptidase S1B family.
  
     0.406
Your Current Organism:
Cellulomonas fimi
NCBI taxonomy Id: 590998
Other names: C. fimi ATCC 484, Cellulomonas fimi ATCC 484, Cellulomonas fimi DSM 20113, Cellulomonas fimi str. ATCC 484, Cellulomonas fimi strain ATCC 484
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.