STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Celf_2521KEGG: cell envelope-related transcriptional attenuator; TIGRFAM: cell envelope-related function transcriptional attenuator, LytR/CpsA family; PFAM: cell envelope-related transcriptional attenuator. (310 aa)    
Predicted Functional Partners:
cobB
Silent information regulator protein Sir2; NAD-dependent protein deacetylase which modulates the activities of several enzymes which are inactive in their acetylated form; Belongs to the sirtuin family. Class II subfamily.
  
    0.766
Celf_1692
KEGG: putative transcriptional regulator.
  
    0.757
Celf_1039
Transcriptional regulator, LysR family; KEGG: saq:Sare_3123 chromosome replication initiation inhibitor protein; TIGRFAM: transcriptional regulator, ArgP family; PFAM: regulatory protein LysR.
   
  
 0.739
Celf_2519
KEGG: cell envelope-related transcriptional attenuator; TIGRFAM: cell envelope-related function transcriptional attenuator, LytR/CpsA family; PFAM: cell envelope-related transcriptional attenuator.
 
   
0.717
Celf_0396
PFAM: helix-turn-helix HxlR type; KEGG: nml:Namu_2856 transcriptional regulator, HxlR family.
   
    0.656
Celf_3755
PFAM: helix-turn-helix HxlR type; KEGG: sna:Snas_6277 transcriptional regulator, HxlR family.
   
    0.656
Celf_1407
Transcriptional regulator, GntR family; KEGG: putative histidine utilization repressor; PFAM: UbiC transcription regulator-associated domain-containing protein; regulatory protein GntR HTH; SMART: regulatory protein GntR HTH.
   
  
 0.610
Celf_2376
KEGG: iron (metal) dependent repressor, DtxR family; PFAM: iron dependent repressor; SMART: iron dependent repressor.
   
    0.608
Celf_0371
PFAM: protein of unknown function DUF179; KEGG: sco:SCO2948 hypothetical protein; Belongs to the UPF0301 (AlgH) family.
   
    0.579
Celf_2371
Soluble ligand binding domain protein; KEGG: bcv:Bcav_1737 competence protein ComEA helix-hairpin-helix repeat protein; PFAM: Soluble ligand binding domain; SMART: Helix-hairpin-helix DNA-binding class 1.
 
     0.562
Your Current Organism:
Cellulomonas fimi
NCBI taxonomy Id: 590998
Other names: C. fimi ATCC 484, Cellulomonas fimi ATCC 484, Cellulomonas fimi DSM 20113, Cellulomonas fimi str. ATCC 484, Cellulomonas fimi strain ATCC 484
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