STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Celf_2617KEGG: hypothetical protein. (162 aa)    
Predicted Functional Partners:
Celf_2618
PFAM: TadE family protein; KEGG: TadE family protein.
 
     0.856
Celf_2619
PFAM: TadE family protein; KEGG: bcv:Bcav_2787 TadE family protein.
 
     0.830
Celf_2622
PFAM: Type II secretion system F domain; KEGG: type II secretion system F domain protein.
 
   
 0.707
Celf_2620
KEGG: bcv:Bcav_2788 hypothetical protein.
 
     0.675
Celf_0644
KEGG: protein of unknown function DUF909; Belongs to the WXG100 family.
  
     0.666
Celf_2621
PFAM: Type II secretion system F domain; KEGG: type II secretion system F domain protein.
 
     0.647
Celf_2461
KEGG: hypothetical protein.
  
     0.623
Celf_2464
KEGG: peptidoglycan-binding lysin domain protein; PFAM: Peptidoglycan-binding lysin domain; SMART: Peptidoglycan-binding LysM.
  
     0.599
Celf_1168
PFAM: aminoglycoside phosphotransferase; KEGG: aminoglycoside phosphotransferase.
 
     0.574
Celf_3088
KEGG: hypothetical protein.
  
     0.555
Your Current Organism:
Cellulomonas fimi
NCBI taxonomy Id: 590998
Other names: C. fimi ATCC 484, Cellulomonas fimi ATCC 484, Cellulomonas fimi DSM 20113, Cellulomonas fimi str. ATCC 484, Cellulomonas fimi strain ATCC 484
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.