STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Celf_2619PFAM: TadE family protein; KEGG: bcv:Bcav_2787 TadE family protein. (131 aa)    
Predicted Functional Partners:
Celf_2618
PFAM: TadE family protein; KEGG: TadE family protein.
 
     0.963
Celf_2622
PFAM: Type II secretion system F domain; KEGG: type II secretion system F domain protein.
 
  
 0.944
Celf_2621
PFAM: Type II secretion system F domain; KEGG: type II secretion system F domain protein.
 
    0.939
Celf_2620
KEGG: bcv:Bcav_2788 hypothetical protein.
 
     0.937
Celf_2623
PFAM: type II secretion system protein E; KEGG: xce:Xcel_1033 type II secretion system protein E.
 
  
 0.843
Celf_2617
KEGG: hypothetical protein.
 
     0.830
Celf_2461
KEGG: hypothetical protein.
 
    0.819
Celf_2460
KEGG: hypothetical protein.
 
     0.779
Celf_3096
PFAM: SAF domain protein; KEGG: SAF domain-containing protein.
  
  
 0.777
Celf_2463
KEGG: hypothetical protein.
  
     0.769
Your Current Organism:
Cellulomonas fimi
NCBI taxonomy Id: 590998
Other names: C. fimi ATCC 484, Cellulomonas fimi ATCC 484, Cellulomonas fimi DSM 20113, Cellulomonas fimi str. ATCC 484, Cellulomonas fimi strain ATCC 484
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.