STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Celf_2631Hypothetical protein; KEGG: rer:RER_32400 TetR family transcriptional regulator. (249 aa)    
Predicted Functional Partners:
Celf_2632
PFAM: thioesterase superfamily protein; KEGG: ami:Amir_5015 thioesterase superfamily protein.
 
    0.811
Celf_2636
PFAM: Extracellular ligand-binding receptor; KEGG: svi:Svir_22980 amino acid-binding protein.
  
     0.715
Celf_2633
PFAM: aminoglycoside phosphotransferase; KEGG: ami:Amir_3460 aminoglycoside phosphotransferase.
 
     0.577
Celf_2635
PFAM: AMP-dependent synthetase and ligase; KEGG: cmi:CMM_2418 putative long-chain-fatty-acid-CoA ligase.
 
     0.558
Celf_2630
KEGG: cmi:CMM_1026 putative glutaryl-CoA dehydrogenase; PFAM: acyl-CoA dehydrogenase domain-containing protein.
       0.548
Celf_2634
PFAM: acyl-CoA dehydrogenase domain-containing protein; KEGG: acyl-CoA dehydrogenase domain protein.
       0.497
Celf_0821
KEGG: response regulator receiver protein; PFAM: response regulator receiver; LmbE family protein; SMART: response regulator receiver.
  
     0.489
Celf_1224
KEGG: gob:Gobs_4976 hypothetical protein.
  
     0.421
Celf_2638
PFAM: inner-membrane translocator; KEGG: svi:Svir_23000 branched-chain amino acid ABC-type transport system, permease component.
  
     0.416
Celf_0399
PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: sro:Sros_4132 glyoxalase family protein.
  
     0.401
Your Current Organism:
Cellulomonas fimi
NCBI taxonomy Id: 590998
Other names: C. fimi ATCC 484, Cellulomonas fimi ATCC 484, Cellulomonas fimi DSM 20113, Cellulomonas fimi str. ATCC 484, Cellulomonas fimi strain ATCC 484
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.