STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Celf_2642KEGG: art:Arth_3028 ArsR family transcriptional regulator; PFAM: regulatory protein ArsR; SMART: regulatory protein ArsR. (198 aa)    
Predicted Functional Partners:
Celf_2641
PFAM: sulphate transporter; Sulfate transporter/antisigma-factor antagonist STAS; KEGG: xce:Xcel_2086 sulphate transporter.
 
     0.918
Celf_2643
PFAM: short-chain dehydrogenase/reductase SDR; KEGG: mmi:MMAR_2981 20-beta-hydroxysteroid dehydrogenase FabG3_1.
       0.558
Celf_2636
PFAM: Extracellular ligand-binding receptor; KEGG: svi:Svir_22980 amino acid-binding protein.
       0.508
Celf_2637
PFAM: inner-membrane translocator; KEGG: tfu:Tfu_1780 ABC transporter permease protein; Belongs to the binding-protein-dependent transport system permease family.
       0.508
Celf_2638
PFAM: inner-membrane translocator; KEGG: svi:Svir_23000 branched-chain amino acid ABC-type transport system, permease component.
       0.508
Celf_2639
ABC transporter related protein; KEGG: svi:Svir_23010 ABC-type branched-chain amino acid transport systems, ATPase component; PFAM: ABC transporter related; SMART: AAA ATPase.
       0.508
Celf_2640
ABC transporter related protein; KEGG: svi:Svir_23020 ABC-type branched-chain amino acid transport systems, ATPase component; PFAM: ABC transporter related; SMART: AAA ATPase.
       0.508
Celf_2644
PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: cai:Caci_5243 alcohol dehydrogenase zinc-binding domain protein.
       0.448
Celf_2645
PFAM: regulatory protein TetR; KEGG: sma:SAV_6613 TetR family transcriptional regulator.
     
 0.448
Celf_2646
PFAM: short-chain dehydrogenase/reductase SDR; KEGG: sen:SACE_5392 3-ketoacyl-(acyl-carrier-protein) reductase.
       0.448
Your Current Organism:
Cellulomonas fimi
NCBI taxonomy Id: 590998
Other names: C. fimi ATCC 484, Cellulomonas fimi ATCC 484, Cellulomonas fimi DSM 20113, Cellulomonas fimi str. ATCC 484, Cellulomonas fimi strain ATCC 484
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