STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Celf_2661TIGRFAM: twitching motility protein; PFAM: type II secretion system protein E; KEGG: twitching motility protein; SMART: AAA ATPase. (389 aa)    
Predicted Functional Partners:
Celf_2005
PFAM: Type II secretion system F domain; KEGG: type II secretion system F domain protein.
  
 0.821
Celf_1997
KEGG: peptidase A24A domain protein; PFAM: peptidase A24A domain protein; peptidase A24A prepilin type IV.
 
   
 0.817
Celf_1996
KEGG: type IV pilus assembly protein PilM; TIGRFAM: type IV pilus assembly protein PilM; PFAM: cell division protein FtsA.
 
   
 0.813
Celf_2004
KEGG: kra:Krad_3025 secretory protein.
 
   
 0.783
Celf_2659
PFAM: transcriptional regulator PadR family protein; KEGG: transcriptional regulator, PadR-like family.
       0.489
Celf_2660
KEGG: hypothetical protein.
       0.489
Celf_2662
TIGRFAM: anti-sigma factor; KEGG: anti-sigma factor.
       0.486
Celf_2663
KEGG: RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma-70 factor; RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2.
       0.485
Celf_2007
KEGG: type II secretion system protein E; PFAM: type II secretion system protein E; General secretory system II protein E domain protein; SMART: AAA ATPase.
 
  
0.451
Your Current Organism:
Cellulomonas fimi
NCBI taxonomy Id: 590998
Other names: C. fimi ATCC 484, Cellulomonas fimi ATCC 484, Cellulomonas fimi DSM 20113, Cellulomonas fimi str. ATCC 484, Cellulomonas fimi strain ATCC 484
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.