STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Celf_2829KEGG: transcriptional regulator, XRE family; PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein. (488 aa)    
Predicted Functional Partners:
Celf_2830
KEGG: isocitrate lyase; TIGRFAM: isocitrate lyase; PFAM: isocitrate lyase and phosphorylmutase.
 
   
 0.730
Celf_2780
KEGG: xce:Xcel_2427 hydrolase of the alpha/beta superfamily-like protein.
  
     0.612
Celf_2831
TIGRFAM: malate synthase A; KEGG: malate synthase A; PFAM: Malate synthase family protein; Belongs to the malate synthase family.
 
   
 0.588
Celf_2550
KEGG: bcv:Bcav_0567 2-methylcitrate dehydratase; PFAM: MmgE/PrpD family protein.
  
  
 0.494
Celf_0842
KEGG: hypothetical protein.
  
     0.438
Celf_2213
KEGG: hypothetical protein.
  
 
   0.438
Your Current Organism:
Cellulomonas fimi
NCBI taxonomy Id: 590998
Other names: C. fimi ATCC 484, Cellulomonas fimi ATCC 484, Cellulomonas fimi DSM 20113, Cellulomonas fimi str. ATCC 484, Cellulomonas fimi strain ATCC 484
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.