STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Celf_2877PFAM: Phosphoesterase HXTX; KEGG: 2'-5' RNA ligase. (204 aa)    
Predicted Functional Partners:
trpS
tryptophanyl-tRNA synthetase; Catalyzes the attachment of tryptophan to tRNA(Trp). Belongs to the class-I aminoacyl-tRNA synthetase family.
     
 0.858
Celf_2876
PFAM: ribonuclease BN; KEGG: ribonuclease BN.
       0.844
Celf_1720
KEGG: hypothetical protein.
  
     0.681
Celf_2462
KEGG: jde:Jden_1818 DNA binding domain protein, excisionase family; TIGRFAM: DNA binding domain protein, excisionase family; PFAM: Prophage CP4-57 regulatory.
  
     0.654
Celf_2492
KEGG: hypothetical protein.
 
     0.634
Celf_3449
KEGG: hypothetical protein.
  
     0.615
Celf_1712
KEGG: hypothetical protein.
  
     0.589
Celf_2463
KEGG: hypothetical protein.
  
     0.567
disA
DNA integrity scanning, DisA, linker region; Has also diadenylate cyclase activity, catalyzing the condensation of 2 ATP molecules into cyclic di-AMP (c-di-AMP). c-di-AMP likely acts as a signaling molecule that may couple DNA integrity with a cellular process.
  
     0.535
Celf_3415
KEGG: hypothetical protein.
  
     0.511
Your Current Organism:
Cellulomonas fimi
NCBI taxonomy Id: 590998
Other names: C. fimi ATCC 484, Cellulomonas fimi ATCC 484, Cellulomonas fimi DSM 20113, Cellulomonas fimi str. ATCC 484, Cellulomonas fimi strain ATCC 484
Server load: low (28%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.