STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Celf_2955PFAM: FAD linked oxidase domain protein; D-arabinono-14-lactone oxidase; KEGG: FAD linked oxidase domain protein. (417 aa)    
Predicted Functional Partners:
xylA
KEGG: xylose isomerase; TIGRFAM: xylose isomerase; PFAM: Xylose isomerase domain-containing protein TIM barrel; Belongs to the xylose isomerase family.
 
  
  0.914
Celf_3626
KEGG: bcv:Bcav_3379 glycoside hydrolase family 2 TIM barrel; manually curated; PFAM: glycoside hydrolase family 2 TIM barrel; glycoside hydrolase family 2 sugar binding; glycoside hydrolase family 2 immunoglobulin domain protein beta-sandwich; glycoside hydrolase family 42 domain 5 loop region.
    
  0.804
Celf_1350
PFAM: ROK family protein; KEGG: xce:Xcel_1048 ROK family protein.
     
  0.800
Celf_2174
KEGG: glucokinase, ROK family; TIGRFAM: glucokinase, ROK family; PFAM: ROK family protein.
     
  0.800
Celf_2954
PFAM: Abortive infection protein; KEGG: CAAX amino terminal protease family.
       0.642
Celf_0606
PFAM: alanine racemase domain protein; KEGG: alanine racemase domain protein.
 
    0.533
Celf_2953
TIGRFAM: conserved hypothetical protein; KEGG: hypothetical protein.
       0.479
Celf_1811
KEGG: glutamate synthase (ferredoxin); PFAM: ferredoxin-dependent glutamate synthase; glutamine amidotransferase class-II; glutamate synthase; glutamate synthase alpha subunit domain protein.
     
 0.467
Your Current Organism:
Cellulomonas fimi
NCBI taxonomy Id: 590998
Other names: C. fimi ATCC 484, Cellulomonas fimi ATCC 484, Cellulomonas fimi DSM 20113, Cellulomonas fimi str. ATCC 484, Cellulomonas fimi strain ATCC 484
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.