STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Celf_2990KEGG: rhamnulose-1-phosphate aldolase/alcohol dehydrogenase; TIGRFAM: rhamnulose-1-phosphate aldolase/alcohol dehydrogenase; PFAM: class II aldolase/adducin family protein; short-chain dehydrogenase/reductase SDR. (684 aa)    
Predicted Functional Partners:
Celf_3309
PFAM: protein of unknown function DUF718; KEGG: hypothetical protein.
 
  
 0.794
Celf_3011
KEGG: ach:Achl_3107 L-rhamnose isomerase; TIGRFAM: L-rhamnose isomerase; PFAM: Xylose isomerase domain-containing protein TIM barrel.
 
     0.792
Celf_3308
KEGG: L-rhamnose isomerase; TIGRFAM: L-rhamnose isomerase; PFAM: Xylose isomerase domain-containing protein TIM barrel.
 
     0.792
Celf_2980
PFAM: alpha-L-rhamnosidase; alpha-L-rhamnosidase domain protein; KEGG: bfa:Bfae_28340 alpha-L-rhamnosidase.
 
 
 0.718
Celf_3306
PFAM: Carbohydrate kinase, FGGY-like; KEGG: pentulose/hexulose kinase.
 
 0.708
Celf_3012
PFAM: Carbohydrate kinase, FGGY-like; KEGG: carbohydrate kinase, FGGY.
 
 0.699
Celf_2991
PFAM: FMN-dependent alpha-hydroxy acid dehydrogenase; KEGG: kfl:Kfla_4296 FMN-dependent alpha-hydroxy acid dehydrogenase.
  
 
 0.683
Celf_3607
KEGG: bcv:Bcav_0376 hypothetical protein.
  
 
 0.496
Celf_0856
KEGG: ami:Amir_2923 regulatory protein DeoR; PFAM: regulatory protein DeoR; periplasmic binding protein/LacI transcriptional regulator; SMART: regulatory protein DeoR.
  
 
 0.482
Celf_2266
PFAM: Acyl transferase; KEGG: acyl transferase.
  
 
 0.455
Your Current Organism:
Cellulomonas fimi
NCBI taxonomy Id: 590998
Other names: C. fimi ATCC 484, Cellulomonas fimi ATCC 484, Cellulomonas fimi DSM 20113, Cellulomonas fimi str. ATCC 484, Cellulomonas fimi strain ATCC 484
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