STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Celf_2996PFAM: fumarylacetoacetate (FAA) hydrolase; KEGG: sco:SCO6308 hydrolase. (333 aa)    
Predicted Functional Partners:
Celf_2997
KEGG: sco:SCO6307 cyclase SCIF309c.
 
     0.828
Celf_2999
PFAM: amidohydrolase 2; KEGG: sco:SCO6305 hypothetical protein.
  
    0.746
Celf_2998
PFAM: monooxygenase FAD-binding; KEGG: ach:Achl_3547 monooxygenase FAD-binding.
  
  
 0.723
Celf_2995
PFAM: Cupin 2 conserved barrel domain protein; KEGG: cupin 2 conserved barrel domain protein.
    
 0.659
Celf_2994
KEGG: mycothiol-dependent maleylpyruvate isomerase.
     
 0.657
Celf_3000
Transcriptional regulator, LysR family; PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: rha:RHA1_ro04909 LysR family transcriptional regulator.
  
    0.494
Celf_3284
PFAM: amidohydrolase 2; KEGG: amidohydrolase 2.
 
     0.447
Celf_1286
PFAM: Aldehyde Dehydrogenase; Proline dehydrogenase; KEGG: NAD-dependent aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.
  
 
 0.444
Celf_2832
PFAM: iron-containing alcohol dehydrogenase; Aldehyde Dehydrogenase; KEGG: iron-containing alcohol dehydrogenase; In the C-terminal section; belongs to the iron-containing alcohol dehydrogenase family.
  
 
 0.437
Celf_2127
PFAM: 3-hydroxyacyl-CoA dehydrogenase NAD-binding; Enoyl-CoA hydratase/isomerase; 3-hydroxyacyl-CoA dehydrogenase domain-containing protein; KEGG: 3-hydroxyacyl-CoA dehydrogenase NAD-binding protein.
  
  
 0.417
Your Current Organism:
Cellulomonas fimi
NCBI taxonomy Id: 590998
Other names: C. fimi ATCC 484, Cellulomonas fimi ATCC 484, Cellulomonas fimi DSM 20113, Cellulomonas fimi str. ATCC 484, Cellulomonas fimi strain ATCC 484
Server load: low (26%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.