STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Celf_3008KEGG: art:Arth_2053 IclR family transcriptional regulator; PFAM: regulatory protein IclR; Transcriptional regulator IclR; SMART: regulatory protein IclR. (260 aa)    
Predicted Functional Partners:
Celf_3007
PFAM: FAD dependent oxidoreductase; KEGG: rha:RHA1_ro01869 salicylate monooxygenase.
 
   
 0.723
Celf_0846
KEGG: fra:Francci3_2974 allophanate hydrolase subunit 1; PFAM: Allophanate hydrolase subunit 1; SMART: Allophanate hydrolase subunit 1.
  
    0.643
Celf_2458
KEGG: transcriptional regulator, IclR family; PFAM: Transcriptional regulator IclR; regulatory protein IclR; SMART: regulatory protein IclR.
  
     0.634
Celf_3006
KEGG: 5-carboxymethyl-2-hydroxymuconateDelta-isomerase; PFAM: fumarylacetoacetate (FAA) hydrolase.
       0.563
Celf_3009
Short-chain dehydrogenase/reductase SDR; KEGG: scb:SCAB_90611 short chain dehydrogenase; manually curated; PFAM: short-chain dehydrogenase/reductase SDR.
  
    0.562
Celf_0847
Urea amidolyase related protein; SMART: Allophanate hydrolase subunit 2; TIGRFAM: urea amidolyase related protein; KEGG: nfa:nfa56520 hypothetical protein; PFAM: Allophanate hydrolase subunit 2.
  
    0.533
Celf_2995
PFAM: Cupin 2 conserved barrel domain protein; KEGG: cupin 2 conserved barrel domain protein.
 
   
 0.530
Celf_3129
KEGG: rop:ROP_14470 hypothetical protein.
 
      0.526
Celf_3285
KEGG: GntR domain protein; PFAM: GntR domain protein; regulatory protein GntR HTH; SMART: regulatory protein GntR HTH.
 
  
 0.520
Celf_3005
TIGRFAM: 3-oxoacid CoA-transferase, A subunit; KEGG: msm:MSMEG_1898 succinyl-CoA:3-ketoacid-coenzyme A transferase 1, precursor; PFAM: coenzyme A transferase.
  
  
 0.506
Your Current Organism:
Cellulomonas fimi
NCBI taxonomy Id: 590998
Other names: C. fimi ATCC 484, Cellulomonas fimi ATCC 484, Cellulomonas fimi DSM 20113, Cellulomonas fimi str. ATCC 484, Cellulomonas fimi strain ATCC 484
Server load: low (30%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.