STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Celf_3169KEGG: phytoene desaturase; TIGRFAM: phytoene desaturase; PFAM: amine oxidase. (591 aa)    
Predicted Functional Partners:
Celf_3170
PFAM: Squalene/phytoene synthase; KEGG: squalene/phytoene synthase.
  
 0.999
Celf_3166
PFAM: UbiA prenyltransferase; KEGG: UbiA prenyltransferase.
 
  
 0.979
Celf_3168
TIGRFAM: lycopene cyclase domain protein; KEGG: lycopene cyclase domain protein.
 
   
 0.975
Celf_3167
TIGRFAM: lycopene cyclase domain protein; KEGG: lycopene cyclase domain protein.
 
  
 0.973
Celf_3171
PFAM: Polyprenyl synthetase; KEGG: cms:CMS_2608 geranylgeranyl pyrophosphate synthase; Belongs to the FPP/GGPP synthase family.
 
  
 0.923
Celf_2733
PFAM: DNA photolyase FAD-binding; DNA photolyase domain protein; KEGG: deoxyribodipyrimidine photo-lyase.
 
  
 0.637
Celf_0119
KEGG: hypothetical protein.
 
     0.602
Celf_2818
PFAM: homoserine dehydrogenase; homoserine dehydrogenase NAD-binding; amino acid-binding ACT domain protein; KEGG: homoserine dehydrogenase.
      
 0.601
clpX
ATP-dependent Clp protease, ATP-binding subunit ClpX; ATP-dependent specificity component of the Clp protease. It directs the protease to specific substrates. Can perform chaperone functions in the absence of ClpP.
      
 0.568
Celf_2166
PFAM: Polyprenyl synthetase; KEGG: polyprenyl synthetase; Belongs to the FPP/GGPP synthase family.
  
  
 0.540
Your Current Organism:
Cellulomonas fimi
NCBI taxonomy Id: 590998
Other names: C. fimi ATCC 484, Cellulomonas fimi ATCC 484, Cellulomonas fimi DSM 20113, Cellulomonas fimi str. ATCC 484, Cellulomonas fimi strain ATCC 484
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