STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Celf_3170PFAM: Squalene/phytoene synthase; KEGG: squalene/phytoene synthase. (329 aa)    
Predicted Functional Partners:
Celf_3169
KEGG: phytoene desaturase; TIGRFAM: phytoene desaturase; PFAM: amine oxidase.
  
 0.999
Celf_3171
PFAM: Polyprenyl synthetase; KEGG: cms:CMS_2608 geranylgeranyl pyrophosphate synthase; Belongs to the FPP/GGPP synthase family.
 
 0.990
Celf_3166
PFAM: UbiA prenyltransferase; KEGG: UbiA prenyltransferase.
 
  
 0.981
Celf_3167
TIGRFAM: lycopene cyclase domain protein; KEGG: lycopene cyclase domain protein.
 
  
 0.977
Celf_3168
TIGRFAM: lycopene cyclase domain protein; KEGG: lycopene cyclase domain protein.
 
   
 0.977
Celf_2166
PFAM: Polyprenyl synthetase; KEGG: polyprenyl synthetase; Belongs to the FPP/GGPP synthase family.
  
 0.943
Celf_0947
PFAM: Polyprenyl synthetase; KEGG: trans-hexaprenyltranstransferase; Belongs to the FPP/GGPP synthase family.
  
 0.940
nuoH
Respiratory-chain NADH dehydrogenase subunit 1; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. This subunit may bind ubiquinone.
   
 
 0.874
Celf_2330
Undecaprenyl diphosphate synthase; Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids.
   
 
 0.830
Celf_1864
TIGRFAM: glyceraldehyde-3-phosphate dehydrogenase, type I; KEGG: glyceraldehyde-3-phosphate dehydrogenase, type I; PFAM: Glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain; Glyceraldehyde 3-phosphate dehydrogenase, catalytic domain; Belongs to the glyceraldehyde-3-phosphate dehydrogenase family.
  
  
 0.798
Your Current Organism:
Cellulomonas fimi
NCBI taxonomy Id: 590998
Other names: C. fimi ATCC 484, Cellulomonas fimi ATCC 484, Cellulomonas fimi DSM 20113, Cellulomonas fimi str. ATCC 484, Cellulomonas fimi strain ATCC 484
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