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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Celf_3203KEGG: cysteine desulfurase; PFAM: aminotransferase class V. (471 aa)    
Predicted Functional Partners:
Celf_1698
KEGG: SUF system FeS assembly protein, NifU family; TIGRFAM: SUF system FeS assembly protein, NifU family; PFAM: nitrogen-fixing NifU domain protein.
 
 
 0.986
Celf_1696
TIGRFAM: FeS assembly ATPase SufC; PFAM: ABC transporter related; KEGG: FeS assembly ATPase SufC; SMART: AAA ATPase.
  
 0.951
Celf_1693
KEGG: FeS assembly protein SufB; TIGRFAM: FeS assembly protein SufB; PFAM: SufBD protein.
 
 0.940
Celf_1694
KEGG: FeS assembly protein SufD; TIGRFAM: FeS assembly protein SufD; PFAM: SufBD protein.
 
 
 0.923
Celf_1699
PFAM: protein of unknown function DUF59; KEGG: protein of unknown function DUF59.
 
  
 0.529
Celf_0860
PFAM: Endonuclease/exonuclease/phosphatase; KEGG: endonuclease/exonuclease/phosphatase.
    
   0.511
Celf_1831
PFAM: Endonuclease/exonuclease/phosphatase; KEGG: endonuclease/exonuclease/phosphatase.
    
   0.511
Celf_2851
PFAM: Endonuclease/exonuclease/phosphatase; KEGG: metal-dependent hydrolase.
    
   0.511
Celf_3204
SMART: Rhodanese domain protein; KEGG: rhodanese domain protein.
 
     0.428
Your Current Organism:
Cellulomonas fimi
NCBI taxonomy Id: 590998
Other names: C. fimi ATCC 484, Cellulomonas fimi ATCC 484, Cellulomonas fimi DSM 20113, Cellulomonas fimi str. ATCC 484, Cellulomonas fimi strain ATCC 484
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