STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Celf_3206PFAM: Tetracyclin repressor domain-containing protein; regulatory protein TetR; KEGG: cwo:Cwoe_5652 transcriptional regulator, TetR family. (267 aa)    
Predicted Functional Partners:
Celf_3208
PFAM: ABC-2 type transporter; KEGG: cwo:Cwoe_5654 ABC-2 type transporter.
 
     0.614
Celf_3207
TIGRFAM: daunorubicin resistance ABC transporter ATPase subunit; PFAM: ABC transporter related; KEGG: sco:SCO4359 ABC transport system ATP-binding protein; SMART: AAA ATPase.
       0.547
Celf_3138
PFAM: Endoribonuclease L-PSP; KEGG: putative translation initiation inhibitor, YjgF family.
  
     0.532
Celf_1443
KEGG: response regulator receiver.
  
     0.524
Celf_0394
PFAM: Activator of Hsp90 ATPase 1 family protein; KEGG: activator of HSP90 ATPase 1 family protein.
  
     0.500
Celf_2545
PFAM: alpha/beta hydrolase fold; KEGG: alpha/beta hydrolase fold protein.
  
     0.435
Celf_1558
Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s); TIGRFAM: diguanylate cyclase; PAS sensor protein; PFAM: EAL domain protein; GGDEF domain containing protein; PAS fold domain protein; KEGG: diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s); SMART: EAL domain protein; GGDEF domain containing protein; PAC repeat-containing protein; PAS domain containing protein.
  
 
 0.425
Celf_2479
KEGG: sen:SACE_0696 hypothetical protein.
  
     0.415
Celf_1927
Diguanylate cyclase with PAS/PAC sensor; TIGRFAM: PAS sensor protein; PFAM: PAS fold-3 domain protein; periplasmic binding protein/LacI transcriptional regulator; GGDEF domain containing protein; KEGG: diguanylate cyclase with PAS/PAC sensor; SMART: GGDEF domain containing protein; PAC repeat-containing protein; PAS domain containing protein.
  
 
 0.413
Your Current Organism:
Cellulomonas fimi
NCBI taxonomy Id: 590998
Other names: C. fimi ATCC 484, Cellulomonas fimi ATCC 484, Cellulomonas fimi DSM 20113, Cellulomonas fimi str. ATCC 484, Cellulomonas fimi strain ATCC 484
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.