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The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Celf_3208PFAM: ABC-2 type transporter; KEGG: cwo:Cwoe_5654 ABC-2 type transporter. (277 aa)    
Predicted Functional Partners:
Celf_3207
TIGRFAM: daunorubicin resistance ABC transporter ATPase subunit; PFAM: ABC transporter related; KEGG: sco:SCO4359 ABC transport system ATP-binding protein; SMART: AAA ATPase.
  
 0.959
Celf_1446
PFAM: ABC-2 type transporter; KEGG: aau:AAur_3851 putative ABC transporter, efflux permease protein.
 
 
0.868
Celf_3716
TIGRFAM: daunorubicin resistance ABC transporter ATPase subunit; PFAM: ABC transporter related; KEGG: bcv:Bcav_0673 daunorubicin resistance ABC transporter ATPase subunit; SMART: AAA ATPase.
  
 0.827
Celf_1065
KEGG: rha:RHA1_ro02602 ABC transporter, ATP-binding component; PFAM: ABC transporter related; SMART: AAA ATPase.
  
 0.826
Celf_1685
TIGRFAM: daunorubicin resistance ABC transporter ATPase subunit; PFAM: ABC transporter related; KEGG: kra:Krad_3923 daunorubicin resistance ABC transporter ATPase subunit; SMART: AAA ATPase.
  
 0.826
Celf_1688
TIGRFAM: daunorubicin resistance ABC transporter ATPase subunit; PFAM: ABC transporter related; KEGG: daunorubicin resistance ABC transporter ATP-binding subunit; SMART: AAA ATPase.
  
 0.826
Celf_1445
KEGG: ach:Achl_3015 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase.
  
 0.823
Celf_3748
KEGG: sma:SAV_6711 ABC transporter ATP-binding protein; PFAM: ABC transporter related; SMART: AAA ATPase.
  
 0.817
Celf_1238
KEGG: nml:Namu_0095 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase.
  
 0.737
Celf_3206
PFAM: Tetracyclin repressor domain-containing protein; regulatory protein TetR; KEGG: cwo:Cwoe_5652 transcriptional regulator, TetR family.
 
     0.614
Your Current Organism:
Cellulomonas fimi
NCBI taxonomy Id: 590998
Other names: C. fimi ATCC 484, Cellulomonas fimi ATCC 484, Cellulomonas fimi DSM 20113, Cellulomonas fimi str. ATCC 484, Cellulomonas fimi strain ATCC 484
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.