STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Celf_3224PFAM: Amidohydrolase 3; KEGG: amidohydrolase 3. (497 aa)    
Predicted Functional Partners:
Celf_3225
KEGG: DNA/RNA non-specific endonuclease; PFAM: DNA/RNA non-specific endonuclease; SMART: Extracellular Endonuclease, subunit A.
       0.561
Celf_3221
KEGG: hypothetical protein.
       0.551
Celf_3222
KEGG: hypothetical protein.
       0.551
Celf_3223
PFAM: transcriptional regulator PadR family protein; KEGG: xce:Xcel_1146 transcriptional regulator, PadR-like family.
       0.551
Celf_0774
PFAM: beta-lactamase; KEGG: bwe:BcerKBAB4_3157 beta-lactamase.
 
     0.400
Your Current Organism:
Cellulomonas fimi
NCBI taxonomy Id: 590998
Other names: C. fimi ATCC 484, Cellulomonas fimi ATCC 484, Cellulomonas fimi DSM 20113, Cellulomonas fimi str. ATCC 484, Cellulomonas fimi strain ATCC 484
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.