STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Celf_3311PFAM: oxidoreductase domain protein; Oxidoreductase domain; KEGG: predicted dehydrogenase. (382 aa)    
Predicted Functional Partners:
Celf_3319
KEGG: hypothetical protein.
 
     0.795
Celf_3312
Hypothetical protein; KEGG: mrb:Mrub_1064 PEGA domain-containing protein.
       0.773
Celf_3320
PFAM: Oxidoreductase domain; oxidoreductase domain protein; KEGG: xce:Xcel_2657 oxidoreductase domain protein.
  
     0.678
Celf_2744
PFAM: Xylose isomerase domain-containing protein TIM barrel; AP endonuclease 2 domain protein; KEGG: bcv:Bcav_1355 xylose isomerase domain protein TIM barrel.
 
  
 0.613
Celf_3296
PFAM: Xylose isomerase domain-containing protein TIM barrel; KEGG: xce:Xcel_0895 xylose isomerase domain protein TIM barrel.
 
  
 0.613
Celf_3618
TIGRFAM: carbohydrate kinase, thermoresistant glucokinase family; KEGG: carbohydrate kinase, thermoresistant glucokinase family; PFAM: shikimate kinase.
 
    
 0.565
Celf_3310
KEGG: transcriptional regulator; PFAM: periplasmic binding protein/LacI transcriptional regulator; regulatory protein LacI; SMART: regulatory protein LacI.
       0.563
Celf_3309
PFAM: protein of unknown function DUF718; KEGG: hypothetical protein.
 
    0.544
Celf_3313
Beta-galactosidase; KEGG: bcv:Bcav_3298 beta-galactosidase; PFAM: Glycoside hydrolase family 42 domain protein; Beta-galactosidase trimerisation domain protein; Beta-galactosidase domain protein.
  
    0.502
lysS
TIGRFAM: lysyl-tRNA synthetase; KEGG: lysyl-tRNA synthetase; PFAM: tRNA synthetase class II (D K and N); nucleic acid binding OB-fold tRNA/helicase-type; Belongs to the class-II aminoacyl-tRNA synthetase family.
  
    0.464
Your Current Organism:
Cellulomonas fimi
NCBI taxonomy Id: 590998
Other names: C. fimi ATCC 484, Cellulomonas fimi ATCC 484, Cellulomonas fimi DSM 20113, Cellulomonas fimi str. ATCC 484, Cellulomonas fimi strain ATCC 484
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