Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Celf_3333Transcriptional regulator, LacI family; KEGG: bfa:Bfae_29250 transcriptional regulator; PFAM: regulatory protein LacI; periplasmic binding protein/LacI transcriptional regulator; SMART: regulatory protein LacI. (655 aa)    
Predicted Functional Partners:
Celf_3332
PFAM: oxidoreductase domain protein; Oxidoreductase domain; KEGG: predicted dehydrogenase.
     0.980
Celf_1811
KEGG: glutamate synthase (ferredoxin); PFAM: ferredoxin-dependent glutamate synthase; glutamine amidotransferase class-II; glutamate synthase; glutamate synthase alpha subunit domain protein.
    
 
 0.615
Celf_3334
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: xce:Xcel_2535 binding-protein-dependent transport systems inner membrane component.
 
     0.552
Celf_3331
KEGG: hypothetical protein.
       0.548
Celf_3336
PFAM: extracellular solute-binding protein family 1; KEGG: tfu:Tfu_1702 sugar-binding protein.
 
     0.536
Celf_3335
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: carbohydrate ABC transporter membrane protein.
       0.495
Your Current Organism:
Cellulomonas fimi
NCBI taxonomy Id: 590998
Other names: C. fimi ATCC 484, Cellulomonas fimi ATCC 484, Cellulomonas fimi DSM 20113, Cellulomonas fimi str. ATCC 484, Cellulomonas fimi strain ATCC 484
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